- Acosta, C. (2006) Rôle du facteur EVF dans l'interaction entre Erwinia carotovora carotovora 15 et Drosophila melanogaster. Thèse, Paris Sud 11 Orsay.

- Albrecht, R., Rehling, P., Chacinska, A., Brix, J., Cadamuro, S. A., Volkmer, R., Guiard, B., Pfanner, N. and Zeth, K. (2006) The Tim21 binding domain connects the preprotein translocases of both mitochondrial membranes. EMBO Reports, 7 (12) 1233-8.

- Andersen, C. B., Ballut, L., Johansen, J. S., Chamieh, H., Nielsen, K. H., Oliveira, C. L., Pedersen, J. S., Seraphin, B., Le Hir, H. and Andersen, G. R. (2006) Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science, 313 (5795) 1968-72.

- Arneodo, A., d’Aubenton-Carafa, Y., Audit, B., Brodie of Brodie, E. B., Nicolay, S., Saint-Jean, P., Thermes, C., Touchon, M. and Vaillant, C. (2006) Large-scale analysis of the human genome : from DNA sequence analysis to the modelling of replication in higher eucaryotes. 14 th EUSIPCO Conference, Florence, Italy

- Aury, J. M., Jaillon, O., Duret, L., Noel, B., Jubin, C., Porcel, B. M., Segurens, B., Daubin, V., Anthouard, V., Aiach, N., Arnaiz, O., Billaut, A., Beisson, J., Blanc, I., Bouhouche, K., Camara, F., Duharcourt, S., Guigo, R., Gogendeau, D., Katinka, M., Keller, A.-M., Kissmehl, R., Klotz, C., Koll, F., Le Mouel, A., Lepere, G., Malinsky, S., Nowacki, M., Nowak, J. K., Plattner, H., Poulain, J., Ruiz, F., Serrano, V., Zagulski, M., Dessen, P., Betermier, M., Weissenbach, J., Scarpelli, C., Schachter, V., Sperling, L., Meyer, E., Cohen, J. and Wincker, P. (2006) Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia. Nature, 444 (7116) 171-8.

- Baharoglu, Z., Petranovic, M., Flores, M. J. and Michel, B. (2006) RuvAB is essential for replication forks reversal in certain replication mutants. EMBO J, 25 (3) 596-604.

- Bangham, J., Jiggins, F. and Lemaitre, B. (2006) Insect immunity: the post-genomic era. Immunity, Vol. 25. Jacques Monod Conference on ‘‘Innate immunity: the post-genomic era’’, June 10th–14th 2006, Roscoff, France

- Barbier, A., Clement-Collin, V., Dergunov, A. D., Visvikis, A., Siest, G. and Aggerbeck, L. P. (2006) The structure of human apolipoprotein E2, E3 and E4 in solution 1. Tertiary and quaternary structure. Biophys Chem, 119 (2) 158-69.

- Barhoumi, M., Tanner, N. K., Banroques, J., Linder, P. and Guizani, I. (2006) Leishmania infantum LeIF protein is an ATP-dependent RNA helicase and an eIF4A-like factor that inhibits translation in yeast. FEBS J, 273 (22) 5086-100.

- Beisson, J. (2006) Preformed cell structure and cell heredity. in Protein based inheritance In press, Y. Chernoff (Ed.), Landes Biosciences publisher, Georgetown, USA.

- Benoit, V. (2006) Recherche de descripteurs spécifiques d'interactions protéine-protéine et protéine-ligand Thèse, Paris 6.

- Bernard, D. (2006) Biogenèse des cytochromes de type c dans la mitochondrie chez la levure Saccharomyces cerevisiae. Thèse, Paris Sud 11 Orsay.

- Bidnenko, V., Lestini, R. and Michel, B. (2006) The Escherichia coli UvrD helicase is essential for Tus removal during recombination-dependent replication restart from Ter sites. Mol Microbiol, 62 (2) 382-96.

- Bigot, S., Saleh, O. A., Cornet, F., Allemand, J.-F. and Barre, F.-X. (2006) Oriented loading of FtsK on KOPS. Nat Struct Mol Biol, 13 (11) 1026-8.

- Brezellec, P., Hoebeke, M., Hiet, M. S., Pasek, S. and Ferat, J.-L. (2006) DomainSieve: a protein domain-based screen that led to the identification of dam-associated genes with potential link to DNA maintenance. Bioinformatics, 22 (16) 1935-1941.

- Brun, S., Vidal, S., Spellman, P., Takahashi, K., Tricoire, H. and Lemaitre, B. (2006) The MAPKKK Mekk1 regulates the expression of Turandot stress genes in response to septic injury in Drosophila. Genes to Cells, 11 (4) 397–407.

- Buffin, E. (2006) Régulation de la transition métaphase-anaphase au cours de la mitose chez la drosophile. Thèse, Paris 6.

- Cerchia, L., D'Alessio, A., Amabile, G., Duconge, F., Pestourie, C., Tavitian, B., Libri, D. and de Franciscis, V. (2006) An autocrine loop involving ret and glial cell-derived neurotrophic factor mediates retinoic acid-induced neuroblastoma cell differentiation. Mol Cancer Res, 4 (7) 481-8.

- Clement-Collin, V., Barbier, A., Dergunov, A. D., Visvikis, A., Siest, G., Desmadril, M., Takahashi, M. and Aggerbeck, L. P. (2006) The structure of human apolipoprotein E2, E3 and E4 in solution. 2. Multidomain organization correlates with the stability of apoE structure. Biophys Chem, 119 (2) 158-69.

- Cordin, O., Banroques, J., Tanner, N. K. and Linder, P. (2006) The DEAD-box protein family of RNA helicases. Gene, 367, 17-37.

- Cormier, S., Le Bras, S., Souilhol, C., Vandormael-Pournin, S., Durand, B., Babinet, C., Baldacci, P. and Cohen-Tannoudji, M. (2006) The murine ortholog of notchless, a direct regulator of the notch pathway in Drosophila melanogaster, is essential for survival of inner cell mass cells. Mol Cell Biol, 26 (9) 3541-9.

- Costa, M., Michel, F., Molina-Sanchez, M. D., Martinez-Abarca, F. and Toro, N. (2006) An alternative intron-exon pairing scheme implied by unexpected in vitro activities of group II intron RmInt1 from Sinorhizobium meliloti. Biochimie, 88 (6) 711-7.

- Costa, M., Michel, F. and Toro, N. (2006) Potential for alternative intron-exon pairings in group II intron RmInt1 from Sinorhizobium meliloti and its relatives. RNA, 12 (3) 338-41.

- Duvezin-Caubet, S., Rak, M., Lefebvre-Legendre, L., Tetaud, E., Bonnefoy, N. and di Rago, J.-P. (2006) A ‘petite-obligate’ mutant of Saccharomyces cerevisiae : functional mtDNA is lethal in cells lacking the delta subunit of mitochondrial F1-ATPaseJ. J Biol Chem, 281 (24) 16305-13.

- Espeli, O. and Boccard, F. (2006) Organization of the Escherichia coli chromosome into macrodomains and its possible functional implications. J Struct Biol, 156 (2) 304-10.

- Figueroa-Bossi, N., Ammendola, S. and Bossi, L. (2006) Differences in gene expression and in enzyme properties account for the uneven contribution of superoxide dismutases SodCI and SodCII to pathogenicity in Salmonella enterica Microbes Infect, 8 (6) 1569-1578.

- Figueroa-Bossi, N., Lemire, S., Maloriol, D., Balbontin, R., Casadesus, J. and Bossi, L. (2006) Loss of Hfq activates the sigmaE-dependent envelope stress response in Salmonella enterica. Mol Microbiol, 62 (3) 838-52.

- Finoux, A.-L. (2006) Etude des facteurs impliqués dans la dégradation des ARNm chez Saccharomyces cerevisiae par fusion de domaines fonctionnels et études in vitro. Thèse, Paris Sud 11 Orsay.

- Finoux, A.-L. and Seraphin, B. (2006) In vivo targeting of the yeast Pop2 deadenylase subunit to reporter transcripts induces their rapid degradation and generates new decay intermediates. J Biol Chem, 281 (36) 25940-7.

- Frazier, A. E., Taylor, R. D., Mick, D. U., Warscheid, B., Stoepel, N., Meyer, H. E., Ryan, M. T., Guiard, B. and Rehling, P. (2006) Mdm38 interacts with ribosomes and is a component of the mitochondrial protein export machinery. J Cell Biol, 172 (4) 553-64.

- Gaisne, M. and Bonnefoy, N. (2006) The COX18 gene, involved in mitochondrial biogenesis, is functionally conserved and tightly regulated in humans and fission yeast. FEMS Yeast Research 6(6) 869-82.

- Guédon, Y., d'Aubenton-Carafa, Y. and Thermes, C. (2006) Analysing grouping of nucleotides in DNA sequences using lumped processes constructed from Markov chains. J Math Biol, 52 343-372.

- Hernández, H., Dziembowski, A., Taverner, T., Séraphin, B. and Robinson, C. V. (2006) Subunit architecture of multimeric complexes isolated directly from cells. EMBO Reports, 7 (6) 605-10.

- Hirsch, J., Lefort, V., Vankersschaver, M., Boualem, A., Lucas, A., Thermes, C., d'Aubenton-Carafa, Y. and Crespi, M. (2006) Characterization of 43 Non-Protein-Coding mRNA Genes in Arabidopsis, Including the MIR162a-Derived Transcripts. Plant Physiol, 140 1192-1204.

- Horan, S., Bourges, I. and Meunier, B. (2006) Transcriptional response to nitrosative stress in Saccharomyces cerevisiae. Yeast, 23 (7) 519-35.

- Jang, I. H., Chosa, N., Kim, S. H., Nam, H. J., Lemaitre, B., Ochiai, M., Kambris, Z., Brun, S., Hashimoto, C., Ashida, M., Brey, P. T. and Lee, W. J. (2006) A spatzle-processing enzyme required for toll signaling activation in Drosophila innate immunity. Dev Cell, 10 (1) 45-55.

- Kambris, K., Brun, S., Jang, I. H., Nam, H. J., Romeo, Y., Takahashi, K., Lee, W., Ueda, R. and Lemaitre, B. (2006) Drosophila Immunity : A large-scale in vivo RNAi screen identifies five new serine proteases required for Toll activation during the Drosophila immune response. Current Biology, 6 (8) 808-13.

- Keita, B., Mbomekalle, I. M., de Oliveira, P., Ranjbari, A., Justum, Y., Nadjo, L. and Pompon, D. (2006) Reactions of 5-substituted polyoxometalates with cystein. Journal of Cluster Science, Apr 2006, 1 - 13. Pre publication on line

- Kerner, P., Zelada Gonzalez, F., Le Gouar, M., Ledent, V., Arendt, D. and Vervoort, M. (2006) The expression of a hunchback ortholog in the polychaete annelid Platynereis dumerilii suggests an ancestral role in mesoderm development and neurogenesis. Dev Genes Evol, 216 (12) 821-8.

- Kisseleva-Romanova, E., Lopreiato, R., Baudin-Baillieu, A., Rousselle, J.-C., Ilan, L., Hofmann, K., Namane, A., Mann, C. and Libri, D. (2006) Yeast homolog of a cancer-testis antigen defines a new transcription complex. EMBO J, 25 (15) 3576-85.

- Kissmehl, R., Kruger, T. P., Treptau, T., Froissard, M. and Plattner, H. (2006) Multigene family encoding 3',5'-cyclic-GMP-dependent protein kinases in Paramecium tetraurelia cells. Eukaryot Cell, 5 (1) 77-91.

- Le Bras, S. and Van Doren, M. (2006) Development of the male germline stem cell niche in Drosophila. Dev Biol, 294 (1) 92-103.

- Le Hir, H. (2006) L'épissage : une étape clé de la régulation de l'expression des gènes chez les eucaryotes supérieurs. HDR, Université Paris Sud 11 Orsay.

- Lebrun, E., Santini, J.-M., Brugna, M., Ducluzeau, A. L., Ouchane, S., Schoepp-Cothenet, B., Baymann, F. and Nitschke, W. (2006) The Rieske Protein: A Case Study on the Pitfalls of Multiple Sequence Alignments and Phylogenetic Reconstruction. Mol Biol Evol, 23 (6) 1180-1191.

- Ledent, V. and Vervoort, M. (2006) Comparative genomics of the class 4 histone deacetylase family indicates a complex evolutionary history. BMC Biol, 4 24.

- Lemire, S. (2006) Les prophages de Salmonella typhimurium : régulation lysogénique et contribution à la pathogénicité. Thèse, Paris-Sud 11.

- Leroy, C., Cormier, L. and Kuras, L. (2006) Independent recruitment of Mediator and SAGA by the activator Met4. Mol Cell Biol, 26 (8) 3149-63.

- Leulier, F., Lhocine, N., Lemaitre, B. and Meier, P. (2006) The Drosophila inhibitor of apoptosis protein DIAP2 functions in innate immunity and is essential to resist gram-negative bacterial infection. Mol Cell Biol, 26 (21) 7821-31.

- Liehl, P., Blight, M., Vodovar, N., Boccard, F. and Lemaitre, B. (2006) Prevalence of local immune response against oral infection in a Drosophila/Pseudomonas infection model. PLoS Pathog, 2 (6) e56.

- Lionnet, T., Dawid, A., Bigot, S., Barre, F.-X., Saleh, O., Heslot, F., Allemand, J.-F., Bensimon, D. and Croquette, V. (2006) DNA mechanics as a tool to probe helicase and translocase activity. Nucleic Acids Res, 34 (15) 4232-44.

- Lorin, S., Dufour, A. and Sainsard, A. (2006) Mitochondrial metabolism and aging in the filamentous fungus Podospora anserina. Biochim Biophys Acta (Bioenergetics), 1757 (5-6) 604-610

- Meinecke, M., Wagner, R., Kovermann, P., Guiard, B., Mick, D. U., Hutu, D. P., Voos, W., Truscott, K. N., Chacinska, A., Pfanner, N. and Rehling, P. (2006) Tim50 Maintains the Permeability Barrier of the Mitochondrial Inner Membrane. Science, 312 (5779) 1523 -1526.

- Menant, A. (2006) Les multiples rôles de l'ubiquitylation dans la régulation du métabolisme des composés soufrés chez la levure. Thèse, Paris Sud 11 Orsay.

- Menant, A., Barbey, R. and Thomas, D. (2006) Substrate-mediated remodeling of methionine transport by multiple ubiquitin-dependent mechanisms in yeast cells. EMBO J, 25 (19) 4436-47.

- Menant, A., Baudouin-Cornu, P., Peyraud, C., Tyers, M. and Thomas, D. (2006) Determinants of the ubiquitin-mediated degradation of the Met4 transcription factor. J Biol Chem, 281 (17) 11744-54.

- Messaoudi, C., Garreau de Loubresse, N., Boudier, T., Dupuis-Williams, P. and Marco, S. (2006) Multiple-axis tomography: applications to basal bodies from Paramecium tetraurelia. Biol Cell, 98 (7) 415-425.

- Morillon, A. (2006) Is histone loss a common mechanism of DNA metabolism ? Biochem Cell Biol, 84 (4) 450-62.

- Morillon, A., Karabetsou, N., Nair, A., Berretta, J. and Mellor, J. (2006) Coupling Chromatin Immunoprecipitation and Micrococcal nuclease to kinetically monitor transcription-induced chromatin changes. in Methods in Enzymology Journal J. Coté (Ed.),

- Muller, C., Pompon, D., Urban, P. and Morfin, R. (2006) Inter-conversion of 7alpha- and 7beta-hydroxy-dehydroepiandrosterone by the human 11beta-hydroxysteroid dehydrogenase type 1. J Steroid Biochem Mol Biol, 99 (4-5) 215-22.

- Narbonne-Reveau, K., Besse, F., Lamour-Isnard, C., Busson, D. and Pret, A.-M. (2006) fused regulates germline cyst mitosis and differentiation during Drosophila oogenesis. Mech Develop, 123 (3) 197-209.

- Nunez-Quintana, M. (2006) Le cytochrome b5 humain comme modèle dans les mécanismes d'interactions pour la formation du complexe protéine-protéine dans les réactions de transport d'électrons du réticulum endoplasmique. Thèse, Paris Sud 11 Orsay.

- Ott, M., Prestele, M., Bauerschmitt, H., Funes, S., Bonnefoy, N. and Herrmann, J. M. (2006) Mba1, a membrane-associated ribosome receptor in mitochondria. EMBO J, 25 (8) 1603-10.

- Pestourie, C., Cerchia, L., Gombert, K., Aissouni, Y., Boulay, J., Franciscis, V. D., Libri, D., Tavitian, B. and Duconge, F. (2006) Comparison of different strategies to select aptamers against a transmembrane protein target. Oligonucleotides, 16 (4) 323-35.

- Pimenta, A., Di Martinoa, P. and Blight, M. (2006) Positive correlation between in vivo and in vitro assays for the evaluation of Pseudomonas virulence. Res Microbiol, 157 (9) 885-90.

- Pye, D., Kyriakouli, D., Taylor, G., Johnson, R., Elstner, M., Meunier, B., Chrzanowska-Lightowlers, Z., Taylor, R., Turnbull, D. and Lightowlers, R. (2006) Production of transmitochondrial cybrids containing naturally occurring pathogenic mtDNA variants. Nucleic Acids Res, 34 (13) e95.

- Remacle, C., Cardol, P., Coosemans, N., Gaisne, M. and Bonnefoy, N. (2006) High-efficiency biolistic transformation of Chlamydomonas mitochondria can be used to insert mutations in complex I genes. Proc Natl Acad Sci, 103 (12) 4771-6.

- Saudemont, A. (2006) Origine évolutive des plans d'organisation chez les bilatériens : étude du déterminisme génétique de la subdivision du mésoderme chez l'annélide Platynereis dumerilii. Thèse, Paris Sud 11 Orsay.

- Saulière, J. (2006) Caractérisation de facteurs impliqués dans l'épissage alternatif du pré-ARNm de la beta-tropomyosine au cours de la différenciation myogénique. Thèse, Paris Sud 11 Orsay.

- Sauliere, J., Sureau, A., Expert-Bezancon, A. and Marie, J. (2006) The polypyrimidine tract binding protein (PTB) represses splicing of exon 6B from the beta-tropomyosin pre-mRNA by directly interfering with the binding of the U2AF65 subunit. Mol Cell Biol, 26 (23) 8755-69.

- Scherfer, C., Qazi, M. R., Takahashi, K., Ueda, R., Dushay, M. S., Theopold, U. and Lemaitre, B. (2006) The Toll immune-regulated Drosophila protein Fondue is involved in hemolymph clotting. Dev Biol, 295 (1) 156-163.

- Simon, E., Camier, S. and Séraphin, B. (2006) New insights into the control of mRNAdecapping. TIBS, 31 (5) 241-243.

- Tang, H., Kambris, Z., Lemaitre, B. and Hashimoto, C. (2006) Two proteases defining a melanization cascade in the immune system of Drosophila. J Biol Chem, 281 (38) 28097-104.

- Thiebaut, M., Kisseleva-Romanova, E., Rougemaille, M., Boulay, J. and Libri, D. (2006) Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance. Mol Cell, 23 (6) 853-64.

- Tounsi, S., Blight, M., Jaoua, S. and de Lima Pimenta, A. (2006) From insects to human hosts: Identification of major genomic differences between entomopathogenic strains of Photorhabdus and the emerging human pathogen Photorhabdus asymbiotica. Int J Med Microbiol, 296 (8) 521-30.

- Vaillant, C., Audit, B., Thermes, C. and Arneodo, A. (2006) Formation and positioning of nucleosomes: Effect of sequence-dependent long-range correlated structural disorder. Eur Phys J E Soft Matter, 19 263-277.

- van der Laan, M., Wiedemann, N., Mick, D. U., Guiard, B., Rehling, P. and Pfanner, N. (2006) A role for Tim21 in membrane-potential-dependent preprotein sorting in mitochondria. Curr Biol, 16 (22) 2271-6.

- Vodovar, N., Vallenet, D., Cruveiller, S., Rouy, Z., Barbe, V., Acosta, C., Cattolico, L., Jubin, C., Lajus, A., Segurens, B., Vacherie, B., Wincker, P., Weissenbach, J., Lemaitre, B., Médigue, C. and Boccard, F. (2006) The complete genome sequence of the entomopatogenic and metabolically versatile soil bacterium Pseudomonas entomophilaNature Biotech, 24 (6) 673-9.

- Wassmer, T. (2006) Molecular biological, structural and functional analysis concerning the mechanism of membrane fusion in Paramecium cells. Thèse, Université de Constance, Allemagne.

- Wassmer, T., Kissmehl, R., Cohen, J. and Plattner, H. (2006) Seventeen a subunit isoforms of Paramecium V-ATPase provide high specialization in localization and function. Mol Biol of the Cell, 17 (2) 917-930.

- Weill, L. (2006) Etude de la fonction d'ARN structurés : Recherche d'un ribozyme de fonction inédite et initiation de la traduction de l'ARN génomique d'HIV-2. Thèse, Paris-Sud 11 Orsay

- Wenz, T., Hellwig, P., MacMillan, F., Meunier, B. and Hunte, C. (2006) Probing the role of E272 in quinol oxidation of mitochondrial complex III. Biochemistry, 45 (30) 9042-52.

- Wiedemann, N., Urzica, E., Guiard, B., Muller, H., Lohaus, C., Meyer, H., Ryan, M. T., Meisinger, C., Muhlenhoff, U., Lill, R. and Pfanner, N. (2006) Essential role of Isd11 in mitochondrial iron-sulfur cluster synthesis on Isu scaffold proteins. EMBO J, 25 184-95.

- Zahedi, R. P., Sickmann, A., Boehm, A. M., Winkler, C., Zufall, N., Schonfisch, B., Guiard, B., Pfanner, N. and Meisinger, C. (2006) Proteomic analysis of the yeast mitochondrial outer membrane reveals accumulation of a subclass of preproteins. Mol Biol Cell, 17 1436-50.

- Zaidman-Remy, A., Hervé, M., Poidevin, M., Pili-Floury, S., Kim, M.-S., Blanot, D., Oh, B. H., Ueda, R., Mengin-Lecreulx, D. and Lemaitre, B. (2006) The Drosophila amidase PGRP-LB adjusts the immune response to bacterial infection. Immunity, 24 (4) 463-73.